Results for 5k7l
EMD-8215
Membrane mimetics: micelle; DDM, CHS, POPC:POPE:POPS; DDM, CHS, POPC:POPE:POPS; extraction buffer: DDM-CHS, POPC,E,S
Cross-sections at different angles
green: density, gray dots: atoms from the all-atom model, lines: membrane boundaries defined by TMDET
The determined edges at each slice and their comparison to TMDET
dots: edges of the gradient, triangles: outliers,
dashed and solid lines: membrane boundaries defined by TMDET and MemBlob ( mean(Zi) decreased by the thickness of the interface region (8 Å))
[ Download results
Resubmit ]
Manual settings applied
* end0 around -27 3
* end1 around 27 5
Boundary values (averages for MemBlob)
Z (PDBTM) | Z (MemBlob) | Z - 8 | |
End1 | 17.25 | 28.39 | 20.39 |
End0 | -17.25 | -29.00 | -21.00 |
Mapping the results to the structure
You can move/scale/rotate the structure.
Blue: a.a. facing to bulk water;
magenta: interface region;
green: a.a. interacting with the hydrophobic membrane core;
yellow: burried a.a.
red: a.a. with an invisible side chain and non-protein molecules, for which DSSP cannot return SASA
[ Download results
Resubmit ]