Results for 5u6o

PDB: 5u6o Gene name: HCN1 UniProt: HCN1_HUMAN EMD: emd_8511.gz
EMD-8511

Membrane mimetics: micelle; LMNG, CHS


Cross-sections at different angles

green: density, gray dots: atoms from the all-atom model, lines: membrane boundaries defined by TMDET



The determined edges at each slice and their comparison to TMDET

dots: edges of the gradient, triangles: outliers,
dashed and solid lines: membrane boundaries defined by TMDET and MemBlob ( mean(Zi) decreased by the thickness of the interface region (8 Å))
[ Download results Resubmit ]

Manual settings applied

* end0 around -30 5
* end1 around 30 5

Boundary values (averages for MemBlob)


Z (PDBTM) Z (MemBlob) Z - 8
End1 15.75 29.28 21.28
End0 -15.75 -32.89 -24.89

Mapping the results to the structure

You can move/scale/rotate the structure. Blue: a.a. facing to bulk water; magenta: interface region; green: a.a. interacting with the hydrophobic membrane core; yellow: burried a.a. red: a.a. with an invisible side chain and non-protein molecules, for which DSSP cannot return SASA
[ Download results Resubmit ]