Results for 5wpv

PDB: 5wpv Gene name: Mcoln1 UniProt: MCLN1_MOUSE EMD: emd_8883.gz
EMD-8883

Membrane mimetics: nanodisc;

Cross-sections at different angles

green: density, gray dots: atoms from the all-atom model, lines: membrane boundaries defined by TMDET

The determined edges at each slice and their comparison to TMDET

dots: edges of the gradient, triangles: outliers,
dashed and solid lines: membrane boundaries defined by TMDET and MemBlob ( mean(Zi) decreased by the thickness of the interface region (8 Å))
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Manual settings applied

* end0 around -20 5
0-30,70-120,160-200,250-290,340-350 end0 around -15 3
* end1 around 18 4

Boundary values (averages for MemBlob)

	Z (PDBTM)	Z (MemBlob)	Z - 8
End1	15.75	20.00	12.00
End0	-15.75	-19.89	-11.89

Mapping the results to the structure

You can move/scale/rotate the structure. Blue: a.a. facing to bulk water; magenta: interface region; green: a.a. interacting with the hydrophobic membrane core; yellow: burried a.a. red: a.a. with an invisible side chain and non-protein molecules, for which DSSP cannot return SASA
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