Results for 3j9j
PDB: 3j9j
Gene name: Trpv1
UniProt: TRPV1_RAT
EMD:
emd_5778.gz
EMD-5778
Membrane mimetics: amphipol; DDM, soybean lipids, then prt:amphipols (1:3 ), then detergent was removed and for cryo-EM detergent was replaced by amphiols
EMD-5778
Membrane mimetics: amphipol; DDM, soybean lipids, then prt:amphipols (1:3 ), then detergent was removed and for cryo-EM detergent was replaced by amphiols
Cross-sections at different angles
green: density, gray dots: atoms from the all-atom model, lines: membrane boundaries defined by TMDET
The determined edges at each slice and their comparison to TMDET
dots: edges of the gradient, triangles: outliers,
dashed and solid lines: membrane boundaries defined by TMDET and MemBlob (mean(Zi) decreased by the thickness of the interface region (8 Å))
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Boundary values (averages for MemBlob)
| Z (PDBTM) | Z (MemBlob) | Z - 8 | |
| End1 | 15.50 | 16.89 | 8.89 |
| End0 | -15.50 | -18.44 | -10.44 |