Results for 5gjw
PDB: 5gjw
Gene name: CACNA2D1
UniProt: CA2D1_RABIT
EMD:
emd_9515.gz
EMD-9515
Membrane mimetics: micelle; digitonin Note: More manual adjustment needed because of the noise level
EMD-9515
Membrane mimetics: micelle; digitonin Note: More manual adjustment needed because of the noise level
Cross-sections at different angles
green: density, gray dots: atoms from the all-atom model, lines: membrane boundaries defined by TMDET
The determined edges at each slice and their comparison to TMDET
dots: edges of the gradient, triangles: outliers,
dashed and solid lines: membrane boundaries defined by TMDET and MemBlob (mean(Zi) decreased by the thickness of the interface region (8 Å))
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Boundary values (averages for MemBlob)
| Z (PDBTM) | Z (MemBlob) | Z - 8 | |
| End1 | 15.05 | 25.89 | 17.89 |
| End0 | -15.05 | -29.22 | -21.22 |