Results for 5h3o
PDB: 5h3o
Gene name: tax-4
UniProt: CNG_CAEEL
EMD:
emd_6656.gz
EMD-6656
Membrane mimetics: amphipol; A8-35; A8-35; solubilized with LMNG, soybean lipids then mixed with amphipol Note: In spite the lack of memblob, the membrane region is detected because of densities among helices
EMD-6656
Membrane mimetics: amphipol; A8-35; A8-35; solubilized with LMNG, soybean lipids then mixed with amphipol Note: In spite the lack of memblob, the membrane region is detected because of densities among helices
Cross-sections at different angles
green: density, gray dots: atoms from the all-atom model, lines: membrane boundaries defined by TMDET
The determined edges at each slice and their comparison to TMDET
dots: edges of the gradient, triangles: outliers,
dashed and solid lines: membrane boundaries defined by TMDET and MemBlob (mean(Zi) decreased by the thickness of the interface region (8 Å))
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Boundary values (averages for MemBlob)
| Z (PDBTM) | Z (MemBlob) | Z - 8 | |
| End1 | 16.75 | 15.83 | 7.83 |
| End0 | -16.75 | -28.11 | -20.11 |