Results for 5nj3
PDB: 5nj3
Gene name: ABCG2
UniProt: ABCG2_HUMAN
EMD:
emd_3654.gz
EMD-3654
Membrane mimetics: nanodisc; protein:1D1:BPL; protein:1D1:BPL; DDM, CHS
EMD-3654
Membrane mimetics: nanodisc; protein:1D1:BPL; protein:1D1:BPL; DDM, CHS
Cross-sections at different angles
green: density, gray dots: atoms from the all-atom model, lines: membrane boundaries defined by TMDET
The determined edges at each slice and their comparison to TMDET
dots: edges of the gradient, triangles: outliers,
dashed and solid lines: membrane boundaries defined by TMDET and MemBlob (mean(Zi) decreased by the thickness of the interface region (8 Å))
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Boundary values (averages for MemBlob)
| Z (PDBTM) | Z (MemBlob) | Z - 8 | |
| End1 | 17.25 | 30.17 | 22.17 |
| End0 | -17.25 | -24.00 | -16.00 |