Results for 5va3
PDB: 5va3
Gene name: KCNH2
UniProt: KCNH2_HUMAN
EMD:
emd_8652.gz
EMD-8652
Membrane mimetics: micelle; POPE:POPC:POPA; POPE:POPC:POPA; loaded into DDM, CHS
EMD-8652
Membrane mimetics: micelle; POPE:POPC:POPA; POPE:POPC:POPA; loaded into DDM, CHS
Cross-sections at different angles
green: density, gray dots: atoms from the all-atom model, lines: membrane boundaries defined by TMDET
The determined edges at each slice and their comparison to TMDET
dots: edges of the gradient, triangles: outliers,
dashed and solid lines: membrane boundaries defined by TMDET and MemBlob (mean(Zi) decreased by the thickness of the interface region (8 Å))
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Boundary values (averages for MemBlob)
| Z (PDBTM) | Z (MemBlob) | Z - 8 | |
| End1 | 15.50 | 25.00 | 17.00 |
| End0 | -15.50 | -30.22 | -22.22 |