Results for 5w3s
PDB: 5w3s
Gene name: MCOLN3
UniProt: MCLN3_CALJA
EMD:
emd_8764.gz
EMD-8764
Membrane mimetics: amphipol; Note: More manual adjustment needed because of the noise level
EMD-8764
Membrane mimetics: amphipol; Note: More manual adjustment needed because of the noise level
Cross-sections at different angles
green: density, gray dots: atoms from the all-atom model, lines: membrane boundaries defined by TMDET
The determined edges at each slice and their comparison to TMDET
dots: edges of the gradient, triangles: outliers,
dashed and solid lines: membrane boundaries defined by TMDET and MemBlob (mean(Zi) decreased by the thickness of the interface region (8 Å))
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Manual settings applied
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Boundary values (averages for MemBlob)
| Z (PDBTM) | Z (MemBlob) | Z - 8 | |
| End1 | 17.50 | 22.00 | 14.00 |
| End0 | -17.50 | -27.50 | -19.50 |