Results for 5wpq
PDB: 5wpq
Gene name: Mcoln1
UniProt: MCLN1_MOUSE
EMD:
emd_8881.gz
EMD-8881
Membrane mimetics: nanodisc; Note: Variable EM density at end0, but it can not be detected reliably because of the noise level
EMD-8881
Membrane mimetics: nanodisc; Note: Variable EM density at end0, but it can not be detected reliably because of the noise level
Cross-sections at different angles
green: density, gray dots: atoms from the all-atom model, lines: membrane boundaries defined by TMDET
The determined edges at each slice and their comparison to TMDET
dots: edges of the gradient, triangles: outliers,
dashed and solid lines: membrane boundaries defined by TMDET and MemBlob (mean(Zi) decreased by the thickness of the interface region (8 Å))
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Boundary values (averages for MemBlob)
| Z (PDBTM) | Z (MemBlob) | Z - 8 | |
| End1 | 15.00 | 19.00 | 11.00 |
| End0 | -15.00 | -23.00 | -15.00 |