Results for 5uak

PDB: 5uak Gene name: CFTR UniProt: CFTR_HUMAN EMD: emd_8516.gz
EMD-8516

Membrane mimetics: micelle; fluorinated Fos-Choline-8


Cross-sections at different angles

green: density, gray dots: atoms from the all-atom model, lines: membrane boundaries defined by TMDET



The determined edges at each slice and their comparison to TMDET

dots: edges of the gradient, triangles: outliers,
dashed and solid lines: membrane boundaries defined by TMDET and MemBlob ( mean(Zi) decreased by the thickness of the interface region (8 Å))
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Manual settings applied

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Boundary values (averages for MemBlob)


Z (PDBTM) Z (MemBlob) Z - 8
End1 14.70 34.11 26.11
End0 -14.70 -20.33 -12.33

Mapping the results to the structure

You can move/scale/rotate the structure. Blue: a.a. facing to bulk water; magenta: interface region; green: a.a. interacting with the hydrophobic membrane core; yellow: burried a.a. red: a.a. with an invisible side chain and non-protein molecules, for which DSSP cannot return SASA
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