Results for 6bcq

PDB: 6bcq Gene name: Trpm4 UniProt: TRPM4_MOUSE EMD: emd_7085.gz
EMD-7085

Membrane mimetics: nanodisc;


Cross-sections at different angles

green: density, gray dots: atoms from the all-atom model, lines: membrane boundaries defined by TMDET



The determined edges at each slice and their comparison to TMDET

dots: edges of the gradient, triangles: outliers,
dashed and solid lines: membrane boundaries defined by TMDET and MemBlob ( mean(Zi) decreased by the thickness of the interface region (8 Å))
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Manual settings applied

* end0 around -18 2
* end1 around 18 2

Boundary values (averages for MemBlob)


Z (PDBTM) Z (MemBlob) Z - 8
End1 12.25 16.78 8.78
End0 -12.25 -21.00 -13.00

Mapping the results to the structure

You can move/scale/rotate the structure. Blue: a.a. facing to bulk water; magenta: interface region; green: a.a. interacting with the hydrophobic membrane core; yellow: burried a.a. red: a.a. with an invisible side chain and non-protein molecules, for which DSSP cannot return SASA
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