Results for 6ezn

PDB: 6ezn Gene name: OST1 UniProt: OST1_YEAST EMD: emd_4161.gz

Membrane mimetics: nanodisc; Note: There is a high level of noise with missleading densities

Cross-sections at different angles

green: density, gray dots: atoms from the all-atom model, lines: membrane boundaries defined by TMDET

The determined edges at each slice and their comparison to TMDET

dots: edges of the gradient, triangles: outliers,
dashed and solid lines: membrane boundaries defined by TMDET and MemBlob ( mean(Zi) decreased by the thickness of the interface region (8 Å))
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Manual settings applied

0-180 end0 around -20 5
210 end0 average 200 220
270,280 end0 average 260 290

Boundary values (averages for MemBlob)

Z (PDBTM) Z (MemBlob) Z - 8
End1 16.00 27.17 19.17
End0 -16.00 -19.33 -11.33

Mapping the results to the structure

You can move/scale/rotate the structure. Blue: a.a. facing to bulk water; magenta: interface region; green: a.a. interacting with the hydrophobic membrane core; yellow: burried a.a. red: a.a. with an invisible side chain and non-protein molecules, for which DSSP cannot return SASA
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