MemBlob

Browse the blobs

There are 92 entries in the database.
Results PDB Gene UniProt EMDB MemEnv Resolution Notes
1oed CHRNA1 ACHA_TORMA emd_1044.gz EMD-1044 N/D 4.0 There is no visible memblob in the EM map
3jc2 PRL PRL_BOVIN emd_3245.gz EMD-3245 N/D 3.6 There is no visible memblob in the EM map
5kyh A8AAA0_IGNH4 emd_8298.gz EMD-8298 N/D 4.0 There is no visible memblob in the EM map
3j9c pagA PAG_BACAN emd_6224.gz EMD-6224 N/D 2.9 There is no visible memblob in the EM map
3j5p Trpv1 TRPV1_RAT emd_5778.gz EMD-5778 amphipol 3.275
3j5q Trpv1 TRPV1_RAT emd_5776.gz EMD-5776 amphipol 3.8
3j9j Trpv1 TRPV1_RAT emd_5778.gz EMD-5778 amphipol 3.275
5a63 APH1A APH1A_HUMAN emd_3061.gz EMD-3061 amphipol 3.4 More manual adjustment needed because of the noise level
5an8 TRPV2 G1SNM3_RABIT emd_6455.gz EMD-6455 amphipol 3.8
5h3o tax-4 CNG_CAEEL emd_6656.gz EMD-6656 amphipol 3.5 In spite the lack of memblob, the membrane region is detected because of densities among helices
5nik macA MACA_ECOLI emd_3652.gz EMD-3652 amphipol 3.3 There is no visible memblob in the EM map
5sy1 stra6 STRA6_DANRE emd_8315.gz EMD-8315 amphipol 3.9 The high level of noise and extra densities of a disordered region in the EM map interfere with the boundary detection
5tj5 VMA6 VA0D_YEAST emd_8409.gz EMD-8409 amphipol 3.9 The high level of noise and extra densities of a disordered region in the EM map interfere with the boundary detection
6c3o ABCC8 ABCC8_HUMAN emd_7338.gz EMD-7338 amphipol 3.9 There is no visible memblob in the EM map
6fn1 ABCB1 MDR1_HUMAN emd_4281.gz EMD-4281 amphipol 3.58 There is a very small blob
6bo9 TRPV6 TRPV6_HUMAN emd_7121.gz EMD-7121 amphipol 4.0 There is no visible memblob in the EM map
6ayf MCOLN3 MCLN3_HUMAN emd_7019.gz EMD-7019 amphipol 3.62
5w3s MCOLN3 MCLN3_CALJA emd_8764.gz EMD-8764 amphipol 2.94 More manual adjustment needed because of the noise level
5fn4 APH1A APH1A_HUMAN emd_3239.gz EMD-3239 amphipol 4.0 TMDET can not process this entry
3jad glra1 GLRA1_DANRE emd_6344.gz EMD-6344 micelle 3.9
3jae glra1 GLRA1_DANRE emd_6345.gz EMD-6345 micelle 3.9
3jaf glra1 GLRA1_DANRE emd_6346.gz EMD-6346 micelle 3.8
3jcu CB2A_SPIOL emd_6617.gz EMD-6617 micelle 3.2 The blob shape is rectangular that may result in +/- error
5gjv CACNA2D1 CA2D1_RABIT emd_9513.gz EMD-9513 micelle 3.6 More manual adjustment needed because of the noise level
5gjw CACNA2D1 CA2D1_RABIT emd_9515.gz EMD-9515 micelle 3.9 More manual adjustment needed because of the noise level
5h1q inx-6 INX6_CAEEL emd_9570.gz EMD-9570 micelle 3.3 The signal for memblob is very low
5h1r inx-6 INX6_CAEEL emd_9571.gz EMD-9571 micelle 3.6 The signal for memblob is very low; in addition, this structure is a complex of two protomers; see the result of 5H1Q for the same protein
5jzh aerA AERA_AERHY emd_8185.gz EMD-8185 micelle 3.9 There is no visible memblob in the EM map
5k7l CALM1 CALM1_HUMAN emd_8215.gz EMD-8215 micelle 3.78
5kuf Grik2 GRIK2_RAT emd_8289.gz EMD-8289 micelle 3.8 There is a very high level of noise in the EM map
5lnk NDUFA1 NDUA1_BOVIN emd_4093.gz EMD-4093 micelle 3.9 There is no visible memblob in the EM map
5tj6 Q5QJC5_APLCA emd_8410.gz EMD-8410 micelle 3.5
5tji Q5QJC5_APLCA emd_8414.gz EMD-8414 micelle 3.8
5tqq CLCNKA E1B792_BOVIN emd_8435.gz EMD-8435 micelle 3.76
5tr1 CLCNKA E1B792_BOVIN emd_8454.gz EMD-8454 micelle 3.95
5u6o HCN1 HCN1_HUMAN emd_8511.gz EMD-8511 micelle 3.5
5u6p HCN1 HCN1_HUMAN emd_8512.gz EMD-8512 micelle 3.51
5u70 KCNT1 KCNT1_CHICK emd_8515.gz EMD-8515 micelle 3.76
5u76 KCNT1 KCNT1_CHICK emd_8517.gz EMD-8517 micelle 3.76
5uak CFTR CFTR_HUMAN emd_8516.gz EMD-8516 micelle 3.87
5uar cftr CFTR_DANRE emd_8461.gz EMD-8461 micelle 3.73
5uj9 ABCC1 MRP1_BOVIN emd_8559.gz EMD-8559 micelle 3.49
5uja ABCC1 MRP1_BOVIN emd_8560.gz EMD-8560 micelle 3.34
5va1 KCNH2 KCNH2_HUMAN emd_8650.gz EMD-8650 micelle 3.7
5va2 KCNH2 KCNH2_HUMAN emd_8651.gz EMD-8651 micelle 3.8
5va3 KCNH2 KCNH2_HUMAN emd_8652.gz EMD-8652 micelle 4.0
5vms CALM2 CALM2_HUMAN emd_8712.gz EMD-8712 micelle 3.7
5wq7 gspD GSPD_ECOLI emd_6675.gz EMD-6675 micelle 3.04 There is no visible memblob in the EM map
5wq8 epsD GSPD_VIBCH emd_6676.gz EMD-6676 micelle 3.26 There is no visible memblob in the EM map
5x0m SCNA1_PERAM emd_6698.gz EMD-6698 micelle 3.8 More manual adjustment needed because of the noise level
6c26 OST1 OST1_YEAST emd_7336.gz EMD-7336 micelle 3.5 More manual adjustment needed because of the noise level; there is missleading density in slices 330-350
6c0v ABCB1 MDR1_HUMAN emd_7325.gz EMD-7325 micelle 3.4 More manual adjustment needed because of the noise level
5z10 Piezo1 PIEZ1_MOUSE emd_6865.gz EMD-6865 micelle 3.97 There is no visible memblob in the EM map
6f36 D7P7X5_9CHLO emd_4176.gz EMD-4176 micelle 3.7 There is no visible memblob in the EM map
6bhu ABCC1 MRP1_BOVIN emd_7099.gz EMD-7099 micelle 3.14
6bgj Ano1 ANO1_MOUSE emd_7096.gz EMD-7096 micelle 3.8 There are extra densities after subtracting the protein density that interfere with the boundary detection
6baa ABCC8 ABCC8_CRICR emd_7073.gz EMD-7073 micelle 3.63
6b2z ATP18 ATP18_YEAST emd_7036.gz EMD-7036 micelle 3.6 There is no well-defined memblob density in the EM map
5oyb Ano1 ANO1_MOUSE emd_3860.gz EMD-3860 micelle 3.75
5wp6 TRPM4 TRPM4_HUMAN emd_8871.gz EMD-8871 micelle 3.8
5wj9 MCOLN1 MCLN1_HUMAN emd_8841.gz EMD-8841 micelle 3.49
5wj5 MCOLN1 MCLN1_HUMAN emd_8840.gz EMD-8840 micelle 3.72 Blobs from non-resolved protein regions at side0 made auto-detection problematic
5xte CYC1 CY1_HUMAN emd_6774.gz EMD-6774 micelle 3.4 Missing densities in the EM map interfere with the boundary detection
5xsy SCNA_ELEEL emd_6770.gz EMD-6770 micelle 4.0
5xno CAB8 CB28_PEA emd_6744.gz EMD-6744 micelle 3.5 High level of noise; strange shapes in the density
5xnn CAB8 CB28_PEA emd_6743.gz EMD-6743 micelle 3.6 The high level of noise and strange shapes in the EM map interfere with the boundary detection
5u1d TAP1 TAP1_HUMAN emd_8482.gz EMD-8482 micelle 3.97 There is a very high level of noise in the EM map and the a large protion of the membrane blob is not included in the EM map
5tcq invG INVG_SALTY emd_8399.gz EMD-8399 micelle 3.6 TMDET can not process this entry
5gaq TXL_EISFE emd_8015.gz EMD-8015 micelle 3.1 TMDET does not process toxins
3jcf corA CORA_THEMA emd_6551.gz EMD-6551 nanodisc 3.8
5irx DKTX_HAPSC emd_8117.gz EMD-8117 nanodisc 2.95
5irz Trpv1 TRPV1_RAT emd_8118.gz EMD-8118 nanodisc 3.28
5is0 Trpv1 TRPV1_RAT emd_8119.gz EMD-8119 nanodisc 3.43
5lki tcdA Q9RN43_PHOLU emd_4068.gz EMD-4068 nanodisc 3.46 TMDET does not process toxins
5nj3 ABCG2 ABCG2_HUMAN emd_3654.gz EMD-3654 nanodisc 3.78
5njg ABCG2 ABCG2_HUMAN emd_3654.gz EMD-3654 nanodisc 3.78 The all-atom structure contains only the transmembrane domains, thus extra densities of NBDs are present in the subtracted map; see the result of 5NJ3 for this protein
5t4d PKD2 PKD2_HUMAN emd_8354.gz EMD-8354 nanodisc 3.0 There is no visible memblob in the EM map
6bqr TRPM4 TRPM4_HUMAN emd_7132.gz EMD-7132 nanodisc 3.2 There is no visible memblob in the EM map
6bqv TRPM4 TRPM4_HUMAN emd_7133.gz EMD-7133 nanodisc 3.1 There is no visible memblob in the EM map
6bo8 TRPV6 TRPV6_HUMAN emd_7120.gz EMD-7120 nanodisc 3.6 There is no visible memblob in the EM map
6bob Trpv6 TRPV6_RAT emd_7123.gz EMD-7123 nanodisc 3.9 There is no visible memblob in the EM map
6ezn OST1 OST1_YEAST emd_4161.gz EMD-4161 nanodisc 3.3 There is a high level of noise with missleading densities
6bgi Ano1 ANO1_MOUSE emd_7095.gz EMD-7095 nanodisc 3.8
6bcl Trpm4 TRPM4_MOUSE emd_7082.gz EMD-7082 nanodisc 3.54
6bcj Trpm4 TRPM4_MOUSE emd_7081.gz EMD-7081 nanodisc 3.14
6bco Trpm4 TRPM4_MOUSE emd_7083.gz EMD-7083 nanodisc 2.88
6bcq Trpm4 TRPM4_MOUSE emd_7085.gz EMD-7085 nanodisc 3.25
5wpq Mcoln1 MCLN1_MOUSE emd_8881.gz EMD-8881 nanodisc 3.64 Variable EM density at end0, but it can not be detected reliably because of the noise level
5wpv Mcoln1 MCLN1_MOUSE emd_8883.gz EMD-8883 nanodisc 3.59
5wpt Mcoln1 MCLN1_MOUSE emd_8882.gz EMD-8882 nanodisc 3.75
5vkq nompC E0A9E1_DROME emd_8702.gz EMD-8702 nanodisc 3.55
5lkh tcdA Q9RN43_PHOLU emd_4068.gz EMD-4068 nanodisc 3.46 TMDET does not process toxins