Browse the blobs
There are 92 entries in the database.
Results | PDB | Gene | UniProt | EMDB | MemEnv | Resolution | Notes |
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1oed | CHRNA1 | ACHA_TORMA | emd_1044.gz EMD-1044 | N/D | 4.0 | There is no visible memblob in the EM map |
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3jc2 | PRL | PRL_BOVIN | emd_3245.gz EMD-3245 | N/D | 3.6 | There is no visible memblob in the EM map |
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5kyh | A8AAA0_IGNH4 | emd_8298.gz EMD-8298 | N/D | 4.0 | There is no visible memblob in the EM map | |
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3j9c | pagA | PAG_BACAN | emd_6224.gz EMD-6224 | N/D | 2.9 | There is no visible memblob in the EM map |
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3j5p | Trpv1 | TRPV1_RAT | emd_5778.gz EMD-5778 | amphipol | 3.275 | |
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3j5q | Trpv1 | TRPV1_RAT | emd_5776.gz EMD-5776 | amphipol | 3.8 | |
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3j9j | Trpv1 | TRPV1_RAT | emd_5778.gz EMD-5778 | amphipol | 3.275 | |
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5a63 | APH1A | APH1A_HUMAN | emd_3061.gz EMD-3061 | amphipol | 3.4 | More manual adjustment needed because of the noise level |
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5an8 | TRPV2 | G1SNM3_RABIT | emd_6455.gz EMD-6455 | amphipol | 3.8 | |
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5h3o | tax-4 | CNG_CAEEL | emd_6656.gz EMD-6656 | amphipol | 3.5 | In spite the lack of memblob, the membrane region is detected because of densities among helices |
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5nik | macA | MACA_ECOLI | emd_3652.gz EMD-3652 | amphipol | 3.3 | There is no visible memblob in the EM map |
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5sy1 | stra6 | STRA6_DANRE | emd_8315.gz EMD-8315 | amphipol | 3.9 | The high level of noise and extra densities of a disordered region in the EM map interfere with the boundary detection |
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5tj5 | VMA6 | VA0D_YEAST | emd_8409.gz EMD-8409 | amphipol | 3.9 | The high level of noise and extra densities of a disordered region in the EM map interfere with the boundary detection |
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6c3o | ABCC8 | ABCC8_HUMAN | emd_7338.gz EMD-7338 | amphipol | 3.9 | There is no visible memblob in the EM map |
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6fn1 | ABCB1 | MDR1_HUMAN | emd_4281.gz EMD-4281 | amphipol | 3.58 | There is a very small blob |
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6bo9 | TRPV6 | TRPV6_HUMAN | emd_7121.gz EMD-7121 | amphipol | 4.0 | There is no visible memblob in the EM map |
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6ayf | MCOLN3 | MCLN3_HUMAN | emd_7019.gz EMD-7019 | amphipol | 3.62 | |
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5w3s | MCOLN3 | MCLN3_CALJA | emd_8764.gz EMD-8764 | amphipol | 2.94 | More manual adjustment needed because of the noise level |
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5fn4 | APH1A | APH1A_HUMAN | emd_3239.gz EMD-3239 | amphipol | 4.0 | TMDET can not process this entry |
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3jad | glra1 | GLRA1_DANRE | emd_6344.gz EMD-6344 | micelle | 3.9 | |
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3jae | glra1 | GLRA1_DANRE | emd_6345.gz EMD-6345 | micelle | 3.9 | |
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3jaf | glra1 | GLRA1_DANRE | emd_6346.gz EMD-6346 | micelle | 3.8 | |
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3jcu | CB2A_SPIOL | emd_6617.gz EMD-6617 | micelle | 3.2 | The blob shape is rectangular that may result in +/- error | |
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5gjv | CACNA2D1 | CA2D1_RABIT | emd_9513.gz EMD-9513 | micelle | 3.6 | More manual adjustment needed because of the noise level |
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5gjw | CACNA2D1 | CA2D1_RABIT | emd_9515.gz EMD-9515 | micelle | 3.9 | More manual adjustment needed because of the noise level |
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5h1q | inx-6 | INX6_CAEEL | emd_9570.gz EMD-9570 | micelle | 3.3 | The signal for memblob is very low |
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5h1r | inx-6 | INX6_CAEEL | emd_9571.gz EMD-9571 | micelle | 3.6 | The signal for memblob is very low; in addition, this structure is a complex of two protomers; see the result of 5H1Q for the same protein |
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5jzh | aerA | AERA_AERHY | emd_8185.gz EMD-8185 | micelle | 3.9 | There is no visible memblob in the EM map |
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5k7l | CALM1 | CALM1_HUMAN | emd_8215.gz EMD-8215 | micelle | 3.78 | |
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5kuf | Grik2 | GRIK2_RAT | emd_8289.gz EMD-8289 | micelle | 3.8 | There is a very high level of noise in the EM map |
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5lnk | NDUFA1 | NDUA1_BOVIN | emd_4093.gz EMD-4093 | micelle | 3.9 | There is no visible memblob in the EM map |
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5tj6 | Q5QJC5_APLCA | emd_8410.gz EMD-8410 | micelle | 3.5 | ||
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5tji | Q5QJC5_APLCA | emd_8414.gz EMD-8414 | micelle | 3.8 | ||
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5tqq | CLCNKA | E1B792_BOVIN | emd_8435.gz EMD-8435 | micelle | 3.76 | |
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5tr1 | CLCNKA | E1B792_BOVIN | emd_8454.gz EMD-8454 | micelle | 3.95 | |
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5u6o | HCN1 | HCN1_HUMAN | emd_8511.gz EMD-8511 | micelle | 3.5 | |
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5u6p | HCN1 | HCN1_HUMAN | emd_8512.gz EMD-8512 | micelle | 3.51 | |
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5u70 | KCNT1 | KCNT1_CHICK | emd_8515.gz EMD-8515 | micelle | 3.76 | |
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5u76 | KCNT1 | KCNT1_CHICK | emd_8517.gz EMD-8517 | micelle | 3.76 | |
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5uak | CFTR | CFTR_HUMAN | emd_8516.gz EMD-8516 | micelle | 3.87 | |
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5uar | cftr | CFTR_DANRE | emd_8461.gz EMD-8461 | micelle | 3.73 | |
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5uj9 | ABCC1 | MRP1_BOVIN | emd_8559.gz EMD-8559 | micelle | 3.49 | |
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5uja | ABCC1 | MRP1_BOVIN | emd_8560.gz EMD-8560 | micelle | 3.34 | |
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5va1 | KCNH2 | KCNH2_HUMAN | emd_8650.gz EMD-8650 | micelle | 3.7 | |
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5va2 | KCNH2 | KCNH2_HUMAN | emd_8651.gz EMD-8651 | micelle | 3.8 | |
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5va3 | KCNH2 | KCNH2_HUMAN | emd_8652.gz EMD-8652 | micelle | 4.0 | |
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5vms | CALM2 | CALM2_HUMAN | emd_8712.gz EMD-8712 | micelle | 3.7 | |
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5wq7 | gspD | GSPD_ECOLI | emd_6675.gz EMD-6675 | micelle | 3.04 | There is no visible memblob in the EM map |
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5wq8 | epsD | GSPD_VIBCH | emd_6676.gz EMD-6676 | micelle | 3.26 | There is no visible memblob in the EM map |
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5x0m | SCNA1_PERAM | emd_6698.gz EMD-6698 | micelle | 3.8 | More manual adjustment needed because of the noise level | |
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6c26 | OST1 | OST1_YEAST | emd_7336.gz EMD-7336 | micelle | 3.5 | More manual adjustment needed because of the noise level; there is missleading density in slices 330-350 |
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6c0v | ABCB1 | MDR1_HUMAN | emd_7325.gz EMD-7325 | micelle | 3.4 | More manual adjustment needed because of the noise level |
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5z10 | Piezo1 | PIEZ1_MOUSE | emd_6865.gz EMD-6865 | micelle | 3.97 | There is no visible memblob in the EM map |
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6f36 | D7P7X5_9CHLO | emd_4176.gz EMD-4176 | micelle | 3.7 | There is no visible memblob in the EM map | |
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6bhu | ABCC1 | MRP1_BOVIN | emd_7099.gz EMD-7099 | micelle | 3.14 | |
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6bgj | Ano1 | ANO1_MOUSE | emd_7096.gz EMD-7096 | micelle | 3.8 | There are extra densities after subtracting the protein density that interfere with the boundary detection |
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6baa | ABCC8 | ABCC8_CRICR | emd_7073.gz EMD-7073 | micelle | 3.63 | |
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6b2z | ATP18 | ATP18_YEAST | emd_7036.gz EMD-7036 | micelle | 3.6 | There is no well-defined memblob density in the EM map |
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5oyb | Ano1 | ANO1_MOUSE | emd_3860.gz EMD-3860 | micelle | 3.75 | |
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5wp6 | TRPM4 | TRPM4_HUMAN | emd_8871.gz EMD-8871 | micelle | 3.8 | |
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5wj9 | MCOLN1 | MCLN1_HUMAN | emd_8841.gz EMD-8841 | micelle | 3.49 | |
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5wj5 | MCOLN1 | MCLN1_HUMAN | emd_8840.gz EMD-8840 | micelle | 3.72 | Blobs from non-resolved protein regions at side0 made auto-detection problematic |
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5xte | CYC1 | CY1_HUMAN | emd_6774.gz EMD-6774 | micelle | 3.4 | Missing densities in the EM map interfere with the boundary detection |
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5xsy | SCNA_ELEEL | emd_6770.gz EMD-6770 | micelle | 4.0 | ||
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5xno | CAB8 | CB28_PEA | emd_6744.gz EMD-6744 | micelle | 3.5 | High level of noise; strange shapes in the density |
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5xnn | CAB8 | CB28_PEA | emd_6743.gz EMD-6743 | micelle | 3.6 | The high level of noise and strange shapes in the EM map interfere with the boundary detection |
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5u1d | TAP1 | TAP1_HUMAN | emd_8482.gz EMD-8482 | micelle | 3.97 | There is a very high level of noise in the EM map and the a large protion of the membrane blob is not included in the EM map |
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5tcq | invG | INVG_SALTY | emd_8399.gz EMD-8399 | micelle | 3.6 | TMDET can not process this entry |
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5gaq | TXL_EISFE | emd_8015.gz EMD-8015 | micelle | 3.1 | TMDET does not process toxins | |
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3jcf | corA | CORA_THEMA | emd_6551.gz EMD-6551 | nanodisc | 3.8 | |
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5irx | DKTX_HAPSC | emd_8117.gz EMD-8117 | nanodisc | 2.95 | ||
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5irz | Trpv1 | TRPV1_RAT | emd_8118.gz EMD-8118 | nanodisc | 3.28 | |
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5is0 | Trpv1 | TRPV1_RAT | emd_8119.gz EMD-8119 | nanodisc | 3.43 | |
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5lki | tcdA | Q9RN43_PHOLU | emd_4068.gz EMD-4068 | nanodisc | 3.46 | TMDET does not process toxins |
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5nj3 | ABCG2 | ABCG2_HUMAN | emd_3654.gz EMD-3654 | nanodisc | 3.78 | |
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5njg | ABCG2 | ABCG2_HUMAN | emd_3654.gz EMD-3654 | nanodisc | 3.78 | The all-atom structure contains only the transmembrane domains, thus extra densities of NBDs are present in the subtracted map; see the result of 5NJ3 for this protein |
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5t4d | PKD2 | PKD2_HUMAN | emd_8354.gz EMD-8354 | nanodisc | 3.0 | There is no visible memblob in the EM map |
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6bqr | TRPM4 | TRPM4_HUMAN | emd_7132.gz EMD-7132 | nanodisc | 3.2 | There is no visible memblob in the EM map |
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6bqv | TRPM4 | TRPM4_HUMAN | emd_7133.gz EMD-7133 | nanodisc | 3.1 | There is no visible memblob in the EM map |
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6bo8 | TRPV6 | TRPV6_HUMAN | emd_7120.gz EMD-7120 | nanodisc | 3.6 | There is no visible memblob in the EM map |
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6bob | Trpv6 | TRPV6_RAT | emd_7123.gz EMD-7123 | nanodisc | 3.9 | There is no visible memblob in the EM map |
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6ezn | OST1 | OST1_YEAST | emd_4161.gz EMD-4161 | nanodisc | 3.3 | There is a high level of noise with missleading densities |
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6bgi | Ano1 | ANO1_MOUSE | emd_7095.gz EMD-7095 | nanodisc | 3.8 | |
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6bcl | Trpm4 | TRPM4_MOUSE | emd_7082.gz EMD-7082 | nanodisc | 3.54 | |
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6bcj | Trpm4 | TRPM4_MOUSE | emd_7081.gz EMD-7081 | nanodisc | 3.14 | |
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6bco | Trpm4 | TRPM4_MOUSE | emd_7083.gz EMD-7083 | nanodisc | 2.88 | |
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6bcq | Trpm4 | TRPM4_MOUSE | emd_7085.gz EMD-7085 | nanodisc | 3.25 | |
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5wpq | Mcoln1 | MCLN1_MOUSE | emd_8881.gz EMD-8881 | nanodisc | 3.64 | Variable EM density at end0, but it can not be detected reliably because of the noise level |
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5wpv | Mcoln1 | MCLN1_MOUSE | emd_8883.gz EMD-8883 | nanodisc | 3.59 | |
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5wpt | Mcoln1 | MCLN1_MOUSE | emd_8882.gz EMD-8882 | nanodisc | 3.75 | |
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5vkq | nompC | E0A9E1_DROME | emd_8702.gz EMD-8702 | nanodisc | 3.55 | |
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5lkh | tcdA | Q9RN43_PHOLU | emd_4068.gz EMD-4068 | nanodisc | 3.46 | TMDET does not process toxins |